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1

Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation

Hussain, Tanweer, Llácer, Jose L., Wimberly, Brian T., Kieft, Jeffrey S., Ramakrishnan, V.

Journal:

Year:

2016

Language:

english

File:

PDF, 10.06 MB

english, 2016

2

A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure

Steckelberg, Anna-Lena, Akiyama, Benjamin M., Costantino, David A., Sit, Tim L., Nix, Jay C., Kieft, Jeffrey S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

3

Structural Basis of Chronic Beryllium Disease: Linking Allergic Hypersensitivity and Autoimmunity

Clayton, Gina M., Wang, Yang, Crawford, Frances, Novikov, Andrey, Wimberly, Brian T., Kieft, Jeffrey S., Falta, Michael T., Bowerman, Natalie A., Marrack, Philippa, Fontenot, Andrew P., Dai, Shaodong,

Journal:

Year:

2014

Language:

english

File:

PDF, 3.20 MB

english, 2014

4

The structures of nonprotein-coding RNAs that drive internal ribosome entry site function

Terra-Dawn M. Plank, Jeffrey S. Kieft

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2012

Language:

english

File:

PDF, 1.95 MB

english, 2012

5

A General Strategy to Solve the Phase Problem in RNA Crystallography

Amanda Y. Keel, Robert P. Rambo, Robert T. Batey, Jeffrey S. Kieft

Journal:

Year:

2007

Language:

english

File:

PDF, 1.35 MB

english, 2007

6

Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures

Jeffrey S. Kieft

Journal:

Year:

2009

Language:

english

File:

PDF, 1.48 MB

english, 2009

7

The Hepatitis C Virus Internal Ribosome Entry Site Adopts an Ion-dependent Tertiary Fold

Jeffrey S. Kieft, Kaihong Zhou, Ronald Jubin, Michael G. Murray, Johnson Y.N. Lau, Jennifer A. Doudna

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 675 KB

english, 1999

8

The Retinal Specific CD147 Ig0 Domain: From Molecular Structure to Biological Activity

Jasmina S. Redzic, Geoffrey S. Armstrong, Nancy G. Isern, David N.M. Jones, Jeffrey S. Kieft, Elan Zohar Eisenmesser

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.68 MB

english, 2011

9

A synonymous variant in scavenger receptor, class B, type I gene is associated with lower SR-BI protein expression and function

Jason Constantineau, Erin Greason, Michael West, Megan Filbin, Jeffrey S. Kieft, Martha Z. Carletti, Lane K. Christenson, Annabelle Rodriguez

Journal:

Atherosclerosis

Year:

2010

Language:

english

File:

PDF, 692 KB

english, 2010

10

Experiences gathered and lessons learned from 20 years of RNA structure

Kieft, Jeffrey S.

Journal:

Year:

2015

Language:

english

File:

PDF, 138 KB

english, 2015

11

Initiation of translation in bacteria by a structured eukaryotic IRES RNA

Colussi, Timothy M., Costantino, David A., Zhu, Jianyu, Donohue, John Paul, Korostelev, Andrei A., Jaafar, Zane A., Plank, Terra-Dawn M., Noller, Harry F., Kieft, Jeffrey S.

Journal:

Year:

2015

Language:

english

File:

PDF, 6.33 MB

english, 2015

12

Molecular prejudice: RNA discrimination against purines allows response to a cellular alarm

Ruehle, Marisa D, Kieft, Jeffrey S

Journal:

Nature Structural and Molecular Biology

Year:

2015

Language:

english

File:

PDF, 873 KB

english, 2015

13

[Methods in Enzymology] Translation Initiation: Reconstituted Systems and Biophysical Methods Volume 430 || Structural Methods for Studying IRES Function

Kieft, Jeffrey S.

Year:

2007

Language:

english

File:

PDF, 737 KB

english, 2007

14

Structured RNAs that evade or confound exonucleases: function follows form

Akiyama, Benjamin M, Eiler, Daniel, Kieft, Jeffrey S

Journal:

Current Opinion in Structural Biology

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

15

Three-way junction conformation dictates self-association of phage packaging RNAs

Hao, Yumeng, Kieft, Jeffrey S.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.52 MB

english, 2016

16

Exoribonuclease-Resistant RNAs Exist within both Coding and Noncoding Subgenomic RNAs

Steckelberg, Anna-Lena, Vicens, Quentin, Kieft, Jeffrey S., Idnurm, Alexander

Journal:

Year:

2018

Language:

english

File:

PDF, 1.25 MB

english, 2018

17

Revisiting the Closed-Loop Model and the Nature of mRNA 5′–3′ Communication

Vicens, Quentin, Kieft, Jeffrey S., Rissland, Olivia S.

Journal:

Year:

2018

Language:

english

File:

PDF, 984 KB

english, 2018

18

Internal translation initiation from HIV-1 transcripts is conferred by a common RNA structure

Plank, Terra-Dawn M, Whitehurst, James T, Cencic, Regina, Pelletier, Jerry, Kieft, Jeffrey S

Journal:

Year:

2014

Language:

english

File:

PDF, 2.21 MB

english, 2014

19

New hypotheses derived from the structure of a flaviviral Xrn1-resistant RNA: conservation, folding, and host adaptation

Kieft, Jeffrey S., Rabe, Jennifer L., Chapman, Erich G.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.02 MB

english, 2015

20

Multi-domain Packing in the Aminoacylatable 3′ End of a Plant Viral RNA

John A. Hammond, Robert P. Rambo, Jeffrey S. Kieft

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

21

Weapons in the molecular arms race

Kieft, Jeffrey S, Pfingsten, Jennifer S

Journal:

Nature Structural and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 278 KB

english, 2005

22

How Flaviviruses use a Unique ‘Slipknot-Like’ Structure to Mechanically Confound a Cellular Exonuclease and Produce Pathogenic RNA

Chapman, Erich G., Costantino, David A., Rabe, Jennifer L., Moon, Stephanie L., Nix, Jay C., Wilusz, Jeffrey, Kieft, Jeffrey S.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

23

tRNA–mRNA mimicry drives translation initiation from a viral IRES

Costantino, David A, Pfingsten, Jennifer S, Rambo, Robert P, Kieft, Jeffrey S

Journal:

Nature Structural and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 787 KB

english, 2007

24

Conservation and Diversity Among the Three-dimensional Folds of the Dicistroviridae Intergenic Region IRESes

Jennifer S. Pfingsten, David A. Costantino, Jeffrey S. Kieft

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.89 MB

english, 2007

25

A CRYO-EM Structure of a Minimal Translation Initiation System: Deletion in Self-Sufficient IRES Prevents Translocation

Jobe, Amy, Ruehle, Marisa D., Kieft, Jeffrey S., Frank, Joachim

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 43 KB

english, 2014

26

Structural Diversity and Phylogenetic Distribution of Valyl tRNA-like Structures in Viruses

Sherlock, Madeline E., Hartwick, Erik W., MacFadden, Andrea, Kieft, Jeffrey S.

Journal:

Year:

2020

File:

PDF, 876 KB

2020

27

Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation

Kieft, Jeffrey S., Zhou, Kaihong, Grech, Angie, Jubin, Ronald, Doudna, Jennifer A.

Journal:

Natural Structural Biology

Year:

2002

Language:

english

File:

PDF, 1.32 MB

english, 2002

28

An Approach to the Construction of Tailor-Made Amphiphilic Peptides That Strongly and Selectively Bind to Hairpin RNA Targets

Lee, Su Jin, Hyun, Soonsil, Kieft, Jeffrey S., Yu, Jaehoon

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 279 KB

english, 2009

29

Ribosome-induced RNA conformational changes in a viral 3′-UTR sense and regulate translation levels

Hartwick, Erik W., Costantino, David A., MacFadden, Andrea, Nix, Jay C., Tian, Siqi, Das, Rhiju, Kieft, Jeffrey S.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.40 MB

english, 2018

30

An RNA Pseudoknot stimulates HTLV-1 pro-pol Programmed -1 Ribosomal Frameshifting

Thulson, Eliza, Hartwick, Erik W., Cooper-Sansone, Andrew, Williams, Marcus A. C., Soliman, Mary E., Robinson, Leila K., Kieft, Jeffrey S., Mouzakis, Kathryn D.

Journal:

Year:

2020

File:

PDF, 4.47 MB

2020

31

Mechanistic Role of Structurally Dynamic Regions in Dicistroviridae IGR IRESs

Jennifer S. Pfingsten, Alice E. Castile, Jeffrey S. Kieft

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.65 MB

english, 2010

32

Preface

Jeffrey Kieft, Encarnacion Martinez-Salas

Journal:

Year:

2009

Language:

english

File:

PDF, 194 KB

english, 2009

33

Viral IRES RNA structures and ribosome interactions

Jeffrey S. Kieft

Journal:

Trends in Biochemical Sciences

Year:

2008

Language:

english

File:

PDF, 1.60 MB

english, 2008

34

Elevated Histone Expression Promotes Life Span Extension

Jason Feser, David Truong, Chandrima Das, Joshua J. Carson, Jeffrey Kieft, Troy Harkness, Jessica K. Tyler

Journal:

Year:

2010

Language:

english

File:

PDF, 2.10 MB

english, 2010

35

HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation

Filbin, Megan E, Vollmar, Breanna S, Shi, Dan, Gonen, Tamir, Kieft, Jeffrey S

Journal:

Nature Structural and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 2.24 MB

english, 2012

36

Diverse self-association properties within a family of phage packaging RNAs

Hao, Yumeng, Kieft, Jeffrey S.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.98 MB

english, 2014

37

Mechanism and structural diversity of exoribonuclease-resistant RNA structures in flaviviral RNAs

MacFadden, Andrea, O’Donoghue, Zoe, Silva, Patricia A. G. C., Chapman, Erich G., Olsthoorn, René C., Sterken, Mark G., Pijlman, Gorben P., Bredenbeek, Peter J., Kieft, Jeffrey S.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.56 MB

english, 2018

38

Viral RNA structure-based strategies to manipulate translation

Jaafar, Zane A., Kieft, Jeffrey S.

Journal:

Nature Reviews Microbiology

Year:

2018

Language:

english

File:

PDF, 2.15 MB

english, 2018

39

Toward a structural understanding of IRES RNA function

Megan E Filbin, Jeffrey S Kieft

Journal:

Current Opinion in Structural Biology

Year:

2009

Language:

english

File:

PDF, 666 KB

english, 2009

40

Disruption of Zika Virus xrRNA1-Dependent sfRNA1 Production Results in Tissue-Specific Attenuated Viral Replication

Sparks, Hadrian, Monogue, Brendan, Akiyama, Benjamin, Kieft, Jeffrey, Beckham, J. David

Journal:

Year:

2020

File:

PDF, 1.98 MB

2020

41

[IEEE 2010 IEEE/OES Autonomous Underwater Vehicles (AUV) - Monterey, CA, USA (2010.09.1-2010.09.3)] 2010 IEEE/OES Autonomous Underwater Vehicles - Efficient propulsion for the Tethys long-range autonomous underwater vehicle

Bellingham, James G., Zhang, Yanwu, Kerwin, Justin E., Erikson, Jonathan, Hobson, Brett, Kieft, Brian, Godin, Michael, McEwen, Robert, Hoover, Thomas, Paul, James, Hamilton, Andrew, Franklin, Jeffrey,

Year:

2010

Language:

english

File:

PDF, 503 KB

english, 2010

42

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

Jeffrey S Kieft, Ignacio Tinoco Jr

Journal:

Year:

1997

Language:

english

File:

PDF, 386 KB

english, 1997

43

Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome

Zhu, Jianyu, Korostelev, Andrei, Costantino, David A., Donohue, John P., Noller, Harry F., Kieft, Jeffrey S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.50 MB

english, 2011

44

A New Subclass of Exoribonuclease-Resistant RNA Found in Multiple Genera of Flaviviridae

Szucs, Matthew J., Nichols, Parker J., Jones, Rachel A., Vicens, Quentin, Kieft, Jeffrey S., Diamond, Michael S.

Journal:

Year:

2020

File:

PDF, 3.59 MB

2020

45

The ion core in RNA folding

Tinoco, Ignacio, Kieft, Jeffrey S.

Journal:

Natural Structural Biology

Year:

1997

File:

PDF, 547 KB

1997

46

Mechanism of ribosome recruitment by hepatitis C IRES RNA

KIEFT, JEFFREY S., ZHOU, KAIHONG, JUBIN, RONALD, DOUDNA, JENNIFER A.

Journal:

Year:

2001

Language:

english

File:

PDF, 3.15 MB

english, 2001

47

The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA

Colussi, Timothy M., Costantino, David A., Hammond, John A., Ruehle, Grant M., Nix, Jay C., Kieft, Jeffrey S.

Journal:

Year:

2014

Language:

english

File:

PDF, 10.73 MB

english, 2014

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